BioVis Meetup @ IEEE VIS 2015
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The document summarizes a BioVis meetup that took place at the IEEE VIS 2015 conference. It provides an agenda for the meetup which included discussions on what BioVis is, announcements, and an open discussion period. It then goes on to provide background on BioVis including its role in visualization, history at past visualization conferences, and future events. It concludes with sections on announcements, careers, and an open discussion on planning the future of the BioVis community.
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BioVis Meetup @ IEEE VIS 2015
- 1. BIOVIS / CITY OF CHICAGO MEETUP IEEE VIS 2015 Conference Liz Marai, Jilian Aurisano, Tom Schenk Jr. & Nils Gehlenborg
- 2. AGENDA ➤ What is BioVis? (12:30 - 1:00) ➤ Announcements (1:00 - 1:30) ➤ Open Discussion (1:30 - end)
- 3. WHAT IS BIOVIS? Challenges, History, and Future
- 5. PUBLICATION experiment DATA INSIGHT HYPOTHESIS interpretation HYPOTHESIS DATA hypothesis generation EXPLORATION HYPOTHESIS-DRIVEN RESEARCHDATA-DRIVEN RESEARCH PRESENTATION “Storytelling” “Pattern Discovery”
- 6. ED Green, MS Guyer & National Human Genome Research Institute, Nature 2011 Charting a Course for Genomic Medicine from Base Pairs to Bedside NHGRI Strategic Plan
- 10. 10 YEARS HUMAN GENOME PROJECT $3B DAYS$5K DAYS$5K DAYS$5K DAYS$5K DAYS$5K DAYS$5K DAYS$5K DAYS$5K
- 13. Precision Medicine Initiative 1 Million+ whole genomes + metabolites + medical records + devices/sensors
- 14. HISTORY OF BIOVIS IEEE VIS Providence, RI 2011 Papers Posters Keynote: Lynda Chin Challenge Talks Biology Primers Data Challenge
- 15. HISTORY OF BIOVIS IEEE VIS Providence, RI 2011 Papers Posters Keynote: Lynda Chin Challenge Talks Biology Primers Data Challenge IEEE VIS Seattle, WA 2012 Papers Posters Keynote: Christof Koch Challenge Talks Biology Primers Data Challenge
- 16. HISTORY OF BIOVIS IEEE VIS Providence, RI 2011 Papers Posters Keynote: Lynda Chin Challenge Talks Biology Primers Data Challenge IEEE VIS Seattle, WA 2012 Papers Posters Keynote: Christof Koch Challenge Talks Biology Primers Data Challenge IEEE VIS Atlanta, GA 2013 Papers Posters Keynote: Daniel Evanko Challenge Talks Biology Primers Data Challenge Redesign Challenge
- 17. HISTORY OF BIOVIS IEEE VIS Providence, RI 2011 Papers Posters Keynote: Lynda Chin Challenge Talks Biology Primers Data Challenge IEEE VIS Seattle, WA 2012 Papers Posters Keynote: Christof Koch Challenge Talks Biology Primers Data Challenge IEEE VIS Atlanta, GA 2013 Papers Posters Keynote: Daniel Evanko Challenge Talks Biology Primers Data Challenge Redesign Challenge ISCB ISMB Boston, MA 2014 Papers Posters Keynote: Tamara Munzner Challenge Talks Visualization Primers Data Challenge Highlights
- 18. HISTORY OF BIOVIS IEEE VIS Providence, RI 2011 Papers Posters Keynote: Lynda Chin Challenge Talks Biology Primers Data Challenge IEEE VIS Seattle, WA 2012 Papers Posters Keynote: Christof Koch Challenge Talks Biology Primers Data Challenge IEEE VIS Atlanta, GA 2013 Papers Posters Keynote: Daniel Evanko Challenge Talks Biology Primers Data Challenge Redesign Challenge ISCB ISMB Boston, MA 2014 Papers Posters Keynote: Tamara Munzner Challenge Talks Visualization Primers Data Challenge Highlights ISCB ISMB/ECCB Dublin, Ireland 2015 Papers Posters Keynote: Torsten Möller Keynote: Larry Hunter Challenge Talks Visualization Primers Data Challenge Redesign Challenge
- 19. ANNOUNCEMENTS Events, Resources, and Opportunities
- 20. HISTORY OF BIOVIS IEEE VIS Providence, RI 2011 Papers Posters Keynote: Lynda Chin Challenge Talks Biology Primers Data Challenge IEEE VIS Seattle, WA 2012 Papers Posters Keynote: Christof Koch Challenge Talks Biology Primers Data Challenge IEEE VIS Atlanta, GA 2013 Papers Posters Keynote: Daniel Evanko Challenge Talks Biology Primers Data Challenge Redesign Challenge ISCB ISMB Boston, MA 2014 Papers Posters Keynote: Tamara Munzner Challenge Talks Visualization Primers Data Challenge Highlights ISCB ISMB/ECCB Dublin, Ireland 2015 Papers Posters Keynote: Torsten Möller Keynote: Larry Hunter Challenge Talks Visualization Primers Data Challenge Redesign Challenge
- 21. FUTURE OF BIOVIS IEEE VIS Seattle, WA 2012 Papers Posters Keynote: Christof Koch Challenge Talks Biology Primers Data Challenge IEEE VIS Atlanta, GA 2013 Papers Posters Keynote: Daniel Evanko Challenge Talks Biology Primers Data Challenge Redesign Challenge ISCB ISMB Boston, MA 2014 Papers Posters Keynote: Tamara Munzner Challenge Talks Visualization Primers Data Challenge Highlights ISCB ISMB/ECCB Dublin, Ireland 2015 Papers Posters Keynote: Torsten Möller Keynote: Larry Hunter Challenge Talks Visualization Primers Data Challenge Redesign Challenge ISCB ISMB Orlando, FL 2016 - July Posters Keynote: TBD Redesign Challenge
- 22. FUTURE OF BIOVIS IEEE VIS Atlanta, GA 2013 Papers Posters Keynote: Daniel Evanko Challenge Talks Biology Primers Data Challenge Redesign Challenge ISCB ISMB Boston, MA 2014 Papers Posters Keynote: Tamara Munzner Challenge Talks Visualization Primers Data Challenge Highlights ISCB ISMB/ECCB Dublin, Ireland 2015 Papers Posters Keynote: Torsten Möller Keynote: Larry Hunter Challenge Talks Visualization Primers Data Challenge Redesign Challenge ISCB ISMB Orlando, FL 2016 - July Posters Keynote: TBD Redesign Challenge IEEE VIS Baltimore, MD 2016 - October Papers Posters Keynote: TBD Challenge Talks Biology Primers Design Challenge
- 23. FUTURE OF BIOVIS ISCB ISMB Boston, MA 2014 Papers Posters Keynote: Tamara Munzner Challenge Talks Visualization Primers Data Challenge Highlights ISCB ISMB/ECCB Dublin, Ireland 2015 Papers Posters Keynote: Torsten Möller Keynote: Larry Hunter Challenge Talks Visualization Primers Data Challenge Redesign Challenge ISCB ISMB Orlando, FL 2016 - July Posters Keynote: TBD Redesign Challenge IEEE VIS Baltimore, MD 2016 - October Papers Posters Keynote: TBD Challenge Talks Biology Primers Design Challenge DREAM Challenge Everywhere 2016 - Winter Data Challenge
- 24. DREAM CHALLENGE - HTTP://DREAMCHALLENGES.ORG
- 25. DREAM CHALLENGE - HTTP://DREAMCHALLENGES.ORG Sub-Challenge 1: Fusion Prediction Sub-Challenge 2: Isoform Prediction Sub-Challenge 3: Somatic SNV Calling Sub-Challenge 4: Visualization
- 26. FUTURE OF BIOVIS ISCB ISMB Boston, MA 2014 Papers Posters Keynote: Tamara Munzner Challenge Talks Visualization Primers Data Challenge Highlights ISCB ISMB/ECCB Dublin, Ireland 2015 Papers Posters Keynote: Torsten Möller Keynote: Larry Hunter Challenge Talks Visualization Primers Data Challenge Redesign Challenge ISCB ISMB Orlando, FL 2016 - July Posters Keynote: TBD Redesign Challenge IEEE VIS Baltimore, MD 2016 - October Papers Posters Keynote: TBD Challenge Talks Biology Primers Design Challenge DREAM Challenge Everywhere 2016 - Winter Data Challenge HTTP://WWW.BIOVIS.NET - FOLLOW @BIOVIS_NET
- 27. OTHER UPCOMING EVENTS ➤ VIZBI 2016, Heidelberg, Germany (March 2016) ➤ BioIT World Expo, Boston, MA, USA (April 2016) ➤ EuroVis, Groningen, The Netherlands (June 2016) ➤ Visual Computing for Biology and Medicine, Bergen, Norway (September 2016)
- 29. BIO-IT WORLD EXPO - HTTP://WWW.BIO-ITWORLDEXPO.COM
- 31. VCBM - HTTP://WWW.VCBM.ORG VCBM 2016, together with MedViz VCBM = Eurographics Workshop on Visual Computing for Biology and Medicine ● 2016 in Bergen, Norway ● collocated with MedViz 2016, ● a >100 participants interdiscipl. ● meeting of medicine & techn. ● important dates: ● June, 2016: full paper deadline ● Sept. 7–9, 2016: workshop
- 32. RESOURCES ➤ BiVi Community Website: http://bivi.co ➤ Nature Methods Points of View Columns: http://www.nature.com/nmeth ➤ BioVis Proceedings: ➤ 2015: http://www.biomedcentral.com/bmcbioinformatics/supplements/16/S11 ➤ 2015: http://www.biomedcentral.com/bmcproc/supplements/9/S6 ➤ 2014: http://www.biomedcentral.com/bmcbioinformatics/series/BioVis2014 ➤ 2013: http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6648474 ➤ 2012: http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6373776 ➤ 2011: http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6083214 ➤ VIZBI Videos: http://www.vizbi.org/Videos
- 33. CAREERS Visualization PostDoc Position We’re looking for a great PostDoc to work on a range of visualization projects, including but not lim- ited to visualization for biology, graph visualization, big data visualization, and heterogeneous data visualization. Ideally, you have experience in writing papers, developing software, preferably for the web, and have a track record of published work at VIS, EuroVis, CHI, BioVis, or similar venues. More Information about this position can be found at http://goo.gl/GJtcca Call for Visualization PhD Students We are looking to admit multiple PhD Students to work on visualization topics. Funding is available. If you’re interested in a great PhD program, like to do research, and enjoy building software apply to our graduate program. We are a large and diverse community of visualization researchers with in- terdisciplinary interests. Talk to Alexander Lex here at VIS, or e-mail alex@sci.utah.edu http://www.sci.utah.edu http://vdl.sci.utah.edu http://caleydo.org Recruiting PostDocs and PhD Students at SCI in Utah More Information
- 34. CAREERS Seeking a postdoctoral candidate interested in applying visualization to guide the development of bioinformatic models. Columbus Ohio, at Nationwide Children’s Hospital and The Ohio State University http://tinyurl.com/pbgmg96
- 35. CAREERS Join a vibrant of community of scientists, physicians, and engineers at Harvard Medical School who are advancing the boundaries of knowledge. Develop visualization approaches to study genomic structural variants, dynamics of the 3D genome, or patient cohorts in cancer genomics. Design new techniques for visual exploration of data repositories or provenance graphs. Apply now. Gehlenborg Lab ∙ http://gehlenborglab.org Postdoctoral Fellowships in Biomedical Data Visualization You will get to work on many multidimensional problems in parallel. oin a vibrant of community of scientists, physicians, and engineers at Harvard Medical chool who are advancing the boundaries of knowledge. Postdoctoral Fellowships in Biomedical Data Visualization
- 36. Postdoctoral Fellowship in Visualization for Biology at Harvard University The Visual Computing Group (VCG) in the School of Engineering and Applied Sciences (SEAS) at Harvard University seeks motivated postdoctoral fellows with a Ph.D. in computer science/engineering, bioinformatics, or a related field to work on varied research projects in visual data analysis. Potential candidates should possess a strong background in the fields of visualization and visual analytics, bioinformatics or similar areas to conduct visualization projects applied to biological and biochemical data. In addition to working closely with scientists, industry partners, and graduate students on research projects, the candidate is expected to actively participate in writing grant proposals. More information about the VCG can be found at http://vcg.seas.harvard.edu/. Candidates should have a substantial publication history (preferred venues are IEEE InfoVis, IEEE VAST, BioVis, Bioinformatics, Nature Methods, and BMC Bioinformatics), a good standing in the research community, as well as good teamwork and communication skills. Ideally, the candidate also has strong software development experience, especially for web-based applications. Competitive salary and benefits are included. The position is available immediately. For more information, please send your CV and at least three references to Michaela Kapp at michaela@seas.harvard.edu. CAREERS
- 37. DISCUSSION Planning the Future of the BioVis Community